Battery died now it won't start with new one

I don't know if my alternator is broken if it is would interior lights, the clock and the radio, ac & windows trunk opener and gas opener not work? Ok my car battery died we try to jump start it and car would turn of but then turn off we figured that the battery was dead so we installed a new battery the car turned on but interior lights, the clock and the radio ac & windows ( windows won't go down) trunk opener and gas opener button did not work we drove the car around and everything was fine other than the things listed I checked all the fuses all of them are fine can someone please tell me whats wrong with my car