Pass-lock reset by scan tool?

The car just would not crank after filling up the gas, the key would not turn. I had it towed home, and got it to start the next day after using some pliers to get the ignition cylinder to turn but after I turned the car off it would not start again. After two days, I got the car to run again, but I had to use a jumper wire after I pulled the relay to the fuel pump out. Once I made it home, (luckily) it would not start again. I replaced the evap canister vent valve thinking it was an issue with the evap system, almost replaced the evap canister purge valve but when I tested it, it checked out fine, it clicked after activating it. I believed it was an issue with the evap system, since noticing that when filling up with gas, it would stop pumping like it was full but still needed more gas. But after the vent valve check out ok I figured I should start from the top. I diagnosed starting with checking for spark and saw that it was not getting a spark. I replaced the crankshaft position sensor A and B (A was a tough one with removing the harmonic balancer). Still no spark. I then replaced the camshaft sensor, still no spark. After checking the wiring, I fixed one of the wires that goes to the fuel pump relay, but then it stopped cranking from the ignition switch, but I got it to crank from using a jumper wire with the crank relay. I then realized it was the passlock most likely stopping the car from cranking from the switch. I replaced the starter because I knew that it needed replacing anyway, it was going out.I went through all the wiring harness and repaired any wire that did not test good. This includes the spark plugs and wires and I replaced the ignition module and coils for good measure. The wires to the spark plugs all looked good except for 2 of the ones on the backside of the engine, which one was really chewed up looking and one that had just a bit of chewing on it.(From mice I think from the previous owner, or when I visited friends that live out in the country areas) I now have spark, but it still won't crank from the ignition switch, only from the fusebox. Still will not start though. My scantool shows that the passlock is activated, and I cannot get it to turn off, I've tried relearning the new ignition switch, also using a resistor, and resetting the pcm/bcm but no luck. At this point, I'm thinking replacing the bcm and pcm is the only other thing I can do, I can't think of anything else that is in the starting category. And besides, I can't get that pass lock to disengage. Also, I have to use a jumper wire to get the fuel pump to activate. Do you think the fuel pump may be going out? Or is it the pass lock that is preventing the fuel pump from activating? Any help would be amazing!