Multiple codes maybe Vacuum/fuel related?

I finally got the replacement engine in. This engine has 82k, came with all the sensors included with the engine, including turbo. I of course put back the original ECM which bolts to the intake, otherwise car would not start. It started fine with no issues, ran it few days while still on the left, and of course I have to re-check everything to make sure no hoses, harness, or connections were damaged or were unplugged. I started it yesterday and took several times to start. The air filter box which connects on the top and which connects to where the MAF sensor it was off, so I thought maybe the air was not measured correctly, but it started. I have several codes which I am sure are correlated. There is a very tiny misfire, or I should say what feels like a minor vac leak which causes a minor hiccup while it's running and parked. Checked codes and this is what I have. First few show all the codes. After I deleted them and started it I got less codes which can be seen in the pictures where I have my finger in it. One of the codes may be blurry to you in one of those pictures but it's 160504. The last picture shows the codes after I deleted them again and restarted.