Ignition lock assembly programming

Hello, I am looking for diagnostic leads for my vehicle listed above. Originally, the key cylinder wiring failed and the cylinder removed along with the necessary steering column parts. We were able to use the master key and key fob tapped directly to Pass-Key III (part #8 of the sub assembly) and manually turn the start switch to run the car without issues - minus the key cylinder. Unfortunately, before I was able to have the cylinder replaced the ignition wire to #8 was broken. At that point, the car won’t start, the warning door chime doubled in timing, error reads under the odometer, and the main dash light indicator Repetitiously cycles through, low washer fluid, red battery symbol, and security. I replaced the part #8 and attached the master key and key fob to the Pass-Key III as it was on the previous one and proceeded to do a master key relearn process to program in the new part. The only thing that changed when trying to reprogram the new part is the word “calibrate” is now on my radio Display. The battery, starter, and alternator are all in good condition. I have checked the wiring, fuses, and relays which are look in proper condition and test good. So I disconnected the battery for 30 minutes, insured proper ground to reset the computer and attached the battery to a jump box. Then using the key fob(with new battery) and master PK3 key in the door cylinders (using 2carpros methods). The fob and keys operated all functions correctly with the exception of starting the car. Then I proceeded to the provided re-learn process. I have now repeated these steps 6 times and no change. I have exhausted all information found online that remotely resembles my issues and Couldn’t find any information or person having the same problem. I’m looking for any help diagnosing the problem. I’m without a Tech2II scanner (version to fit my car unknown).