Rough idle and missing

I was recently having issues with my car starting to idle rough and miss really bad after I had started it, turned it off and started again. We replace the spark plugs and wires. Once that was done it idled rough and missed the entire time it was running. So, we also replaced the coil pack and I did a cleaning on the throttle body and MAF sensor. It got a lot better after that but I can still feel it missing. Does anyone have any info or tips on figuring out the cause? Any help is appreciated. Thank you!