Good morning.
If the fuel filter was not installed correctly, you would have fuel leak. It would smell very badly of raw fuel. He may have meant that it was not secure in its mounting. A fuel filter will not cause this issue.
As far as the fuel pump, no, the battery does not have to be disconnected at all. It will not make a difference in the end result of the repair. Even though it is recommended, it is not always done.
Possible cause is a crankshaft position sensor. This is a common failure for your exact issue as the signal drops and the truck will stall and start right back up.
Is the check engine light on? If it is, do you know the codes?
Roy
https://www.2carpros.com/articles/crankshaft-angle-sensor-replacement
https://www.2carpros.com/articles/symptoms-of-a-bad-crankshaft-sensor
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Tuesday, June 19th, 2018 AT 7:36 AM