2002 Honda Civic it makes noise when pulling out in 1, 2, 3

Transmission problem
2002 Honda Civic 4 cyl Manual 155000 miles

it sounds like if the fan was hitting but there not I checked for any sings that would indicate rubbing but no sings so I think it has something 2do with the tranny because when its making that noise I put the clutch in and it stops but I dont think is the cluth cause it dosent make any noise when its in the car is completly stoped and the ingine is running