Hi,
It could be a few different things. Do you actually feel the miss? Also, there should be a code related to a "misfire." I'm not sure what scanner you have, but most of the Snap-on scanners will tell you how many times a specific cylinder has misfired.
Also, if you have live data on the scan tool, let me know what the fuel trims are and if possible, when the engine is cold and not started for the day, let me know what the engine coolant temp sensor is signaling.
One last thought. Have you checked for vacuum leaks and confirmed the fuel pressure is within spec?
Here are two links that explain how to test both:
https://www.2carpros.com/articles/how-to-use-an-engine-vacuum-gauge
https://www.2carpros.com/articles/how-to-check-fuel-system-pressure-and-regulator
Let me know. Also, the fuel trims will likely tell me if there is a leak or high pressure.
Take care,
Joe
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Tuesday, August 24th, 2021 AT 8:17 PM