1997 Acura Integra Misfiring and very low, rough idleing

Honda CR-X with Acura Integra GS-R swap. 88, xxx miles on engine. I just recently completed a swap to try and get BARD. My car would turn on and idle at about 100 RPM's. When I would press on the gas pedal to rev it up it would only go up to about 3500 rpms and would start misfiring. Eventually after letting go of the pedal, it would idle back to 100 rpms and would die after about a minute or two. I checked for spark and fuel and both are present. I tested the fuel injectors by listening for the clicks from each injector and I can hear all four injectors clicking. I was thinking it might be a lean misfire but im not too sure on that. Any ideas on what the problem could be?