Windows dont work car has to warm up before.

If you can check trans fluid level to make sure it is full then have a trans guy scan for codes, you may have aseal bad or clutch pak worn

As for windows, check circuit breakder in under dash box if that is good then check switches altough it could be a module connection problem. Also check this
Symptoms indicate bad switch. Clicking when depressing down button for driver window. No other windows work. Switch has power and ground. Replacing switch did not solve problem. Check main door harness connector inside driver A pillar for corroded/deteriorated ground connection. Poor ground in this connector was causing failure of all power windows.

If the switches are working and you don't have the ground in the connector then it hasto be tehmain switch is bad as long as everything is getting power. And grounding.

Any other ideas on what? As far astrans it cold aslo be a bad govenor