Find a vw repair shop.
Tell them the same story. At minimum you need to have the transmission filled to the correct level (measured at a specific temperature).
Even though fluid was drained, the transmission will still be holding several liters in the torque converter. So if you decide to get the pan repaired / replaced, along with the filter that is above the pan, the only way to do a full fluid flush, is with a machine that is attached to the transmission while the engine is running.
Giving you dollar estimates is really no good, since it will vary from shop to shop and depending on what you want (simple top up or full flush with filter or even a pan replacement.
Friend a good vw shop through word of mouth and stick with them.
Thomas
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Monday, October 21st, 2013 AT 9:46 PM