More than likely this is still related to the EGR valve. I would not bypass the EGR as the PCM is expecting a certain amount of exhaust gas to be introduced back into the intake.
I would suggest testing the EGR to find out if it has failed. If it has then replace it.
Here is a video that shows how to test the valve:
https://youtu.be/DqUCbbKdWf4
As for the rough idle that is more than likely a vacuum leak that we need to find. Here is a guide that will show you how to do this:
https://www.2carpros.com/articles/how-to-use-an-engine-vacuum-gauge
Below you will find the process from the manual on how to test and replace the EGR valve as well. I highly suspect that once the EGR is operating that most issues will be resolved.
Please run through this information and let us know what you find.
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Tuesday, July 20th, 2021 AT 2:09 PM