Yep, the shocks and brakes have nothing to do with each other. You must have cut the wrong line, here is a diagram of the system so you can see what I am talking about. Check out the images (below). Please let us know what happens.
Repair Safety Notice: This information is for general instructional purposes only. Vehicle repair can be dangerous. Verify all information, follow manufacturer service procedures, use proper tools and safety equipment, and consult a qualified repair shop when needed.