The cleaning, and new air filter was most likely the mass air sensor which can cause the chugging, however if the MAF is miss reading or bad cleaning it may make the problem better for a bit, or can damage the sensor if done improperly. The other thing that comes to mind especially on the late 1990's and early 2000 Ford engines, the fuel pressure regulator is tied to the fuel pump. I would have the system pressure tested to ensure you are getting a consistent pressure from it, and that it is not dropping out.
Also I would take it to a shop that can dig a little deeper diagnostics wise, and can look into how the o2 sensors are performing as well As the mass air.
I hope this is a start for you. Also what code where they able to retrieve ?
This guide can help as well.
https://www.2carpros.com/articles/engine-cranks-excessively-before-starting
Please go over this guide and report back.
SPONSORED LINKS
Wednesday, March 16th, 2016 AT 1:02 AM