Well, you may not like the answer to the problem. That transmission is aptly named as a D@%# Piece of S$%#. It has been nothing but problems since Ford started using it. I'm shocked you made it 200,000 without an issue! The way that transmission works is that it is essentially two transmissions in one case with gears 1,3 and 5 on one clutch and 2,4 and 6 on the other.
The most common item in this failure mode is the transmission control module. It is not a real hard part as far as replacing it physically, but then it has to be programmed to your vehicle and then calibrated to match the wear in the transmission and your driving habits. Not something that can be done with the scan tool you have. Ford has an extended warranty on the TCM, but you are already over the 5 years or 150,000 miles. That said, calling a dealer to see if they might extend a goodwill gesture wouldn't hurt. Just don't call the one who lied to you! This is a very well known issue with this transmission.
There is a possible other thing you can take a look at as well. It should be applicable to your car as they didn't change much in the transmission and wiring over the years in that car.
Rather than type it all out you can watch a few videos on that transmission.
https://www.youtube.com/watch?v=eh8PIL5E_6M
https://www.youtube.com/watch?v=SAtpPOXf6co
https://www.youtube.com/watch?v=6YSbG7JCYj8
Monday, December 9th, 2019 AT 3:33 PM