I think you had two problems.
The clunking noise was probably due to the A/C compressor clutch which on these cars can tend to lock up and causes strain on the engine due to the lack of easy movement when the system engages.
I would next take the car to an Autozone and get a free diagnostic to check for any trouble codes. My thoughts are that you have a problem with the MAF/MAP sensor, or the IAC (Idle Air Control) Valve. The other thing, is the EGR system, which on these cars, is supposed to be closed at start-up and open when it warms up. If the system is open at start-up it will idle faster to compensate for the exhaust air going into the air stream when it's not a good time for it.
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Saturday, February 7th, 2009 AT 10:00 PM