You cannot bypass the alarm it sounds like the immobilizer unit is going out here is the location and the security system wiring diagrams so you can see how the system works.
You will need to get the new unit initialized before it will work. I have also seen the alarm horn which has a battery in it cause this issue as well. Here is a video of the job being done on a different car but the procedure is the same:
https://youtu.be/3S0Ns3O3ULA
Check out the diagrams (below). Please let us know what happens.
Cheers, Ken
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Friday, August 24th, 2018 AT 6:27 PM