Welcome to 2CarPros.
The hole is before the mass air flow sensor, so it won't affect that, but it should be fixed. It is drawing in heated air from under the hood and not fresh air from the front of the vehicle.
As far as the misfire, it could be a few things. First, often times an engine vacuum leak can cause a rough idle and misfire, but since it went away, I doubt that is the issue. So, the next step is to remove the coil and plug on cylinder 4 and inspect. If everything looks okay, I want you to switch the coil pack from that cylinder with a different cylinder., If it happens again and the cylinder changes for the misfire, replace the coil pack.
I have no idea how many miles are on the plugs, so make sure if needed you replace them all as well as make sure simple things such as a partially plugged air filter isn't an issue.
Here is a link you may find helpful:
https://www.2carpros.com/articles/how-to-change-spark-plugs
Let me know what you find.
Take care,
Joe
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Wednesday, September 11th, 2019 AT 6:42 PM